PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LGM59
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 255aa    MW: 29061.8 Da    PI: 4.6087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LGM59genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-135496754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+      +K++Ka+i + A++YI +L
  Araip.LGM59 54 VSERNRRKKLNERLFALRAVVPNI-----TKMDKASIIKDAIDYIEHL 96
                 57*********************7.....7*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3234796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1847112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-1350101No hitNo description
SMARTSM003533.5E-1553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1653113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-115496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEDCEDYKNY WETNMFLQTQ ELDSWQLDEA FSGGYYDSSS PDGGASSAAS KNIVSERNRR  60
KKLNERLFAL RAVVPNITKM DKASIIKDAI DYIEHLHEQE RRIQDEIMEL ESEKLKNPII  120
AAAGDNDFEQ DLPVLLRSKK KRPDNLLFDT SASSSSRNNT NYFPIELIDL RVTYKGEKIF  180
VVSLTCSKRT DTMVKLCEVF ESLKLKIITA NITSFSGTLS ETLFVEADEE EKDHLLIRIQ  240
TAIAALNDPQ SPMSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178136.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-90BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A151RW061e-127A0A151RW06_CAJCA; Transcription factor bHLH35
STRINGGLYMA09G06770.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-77bHLH family protein